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Publications

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2013       Niu F, Shaw N, Wang YE, Jiao L, Ding W, Li X, Zhu P, Upur H, Ouyang S, Cheng G, Liu ZJ. (2013) Structure of the Leanyer Orthobunyavirus Nucleoprotein-RNA complex reveals novel architecture for RNA encapsidation. PNAS, doi: 10.1073/pnas.1300035110

2013       Won EY, Xie Y, Takemoto C, Chen L, Liu ZJ, Wang BC, Lee D, Woo EJ, Park SG, Shirouzu M, Yokoyama S, Kim SJ, Chi SW. (2013) High-resolution crystal structure of the catalytic domain of human dual-specificity phosphatase 26. Acta Crystallogr D Biol Crystallogr, doi: 10.1107/S0907444913004770

2013       Jiao L, Ouyang S, Liang M, Niu F, Shaw N, Wu W, Ding W, Jin C, Peng Y, Zhu Y, Zhang F, Wang T, Li C, Zuo X, Luan CH, Li D, Liu ZJ. (2013) Structure of severe fever with thrombocytopenia syndrome virus nucleocapsid protein in complex with suramin reveals therapeutic potential. J. Virology, doi: 10.1128/JVI.00672-13

2013       Ru H, Ni X, Zhao L, Crowley C, Ding W, Hung LW, Shaw N, Cheng G, Liu ZJ. (2013) Structural basis for termination of AIM2-mediated signaling by p202. Cell Research, doi: 10.1038/cr.2013.52

2014       Gu J, Feng Y, Feng X, Sun C, Lei L, Ding W, Niu F, Jiao L, Yang M, Li Y, Liu X, Song J, Cui Z, Han D, Du C, Yang Y, Ouyang S, Liu ZJ, Han W. (2014) Structural and biochemical characterization reveals LysGH15 as an unprecedented EF-hand-like calcium-binding phage lysin. PLOS Pathogens, doi: 10.1371/journal.ppat.1004109

2014       Zhang L, Mo J, Swanson KV, Wen H, Petrucelli A, Gregory SM, Zhang Z, Schneider M, Jiang Y, Fitzgerald KA, Ouyang S, Liu ZJ, Damania B, Shu HB, Duncan JA, Ting JP. (2014) NLRC3, a member of the NLR family of proteins, is a negative regulator of innate immunesignaling induced by the DNA sensor STING. Immunity, doi: 10.1016/j.immuni.2014.01.010

2014       Zhang K, Zhang J, Gao ZG, Zhang D, Zhu L, Han GW, Moss SM, Paoletta S, Kiselev E, Lu W, Fenalti G, Zhang W, Müller CE, Yang H, Jiang H, Cherezov V, Katritch V, Jacobson KA, Stevens RC, Wu B, Zhao Q., (2014) Structure of the human P2Y12 receptor in complex with an antithrombotic drug, Nature, 509(7498):115-8.

2014       Zhang J, Zhang K, Gao ZG, Paoletta S, Zhang D, Han GW, Li T, Ma L, Zhang W, Müller CE, Yang H, Jiang H, Cherezov V, Katritch V, Jacobson KA, Stevens RC, Wu B, Zhao Q., (2014) Agonist-bound structure of the human P2Y12 receptor, Nature, 509(7498):119-22.

2014       Zhao, L., Hua, t., Crowley, C., Ru, H., Ni, X., Shaw, N., Jiao, L., Ding, W., Qu, L., Hung, L., Huang, W., Liu, L., Ye, K., OuYang, S*, Cheng, G*, and Liu, Z. J*, (2014) Structural analysis of asparaginylendopeptidase reveals the activation mechanism and a reversible intermediate maturation stage, Cell Res, 24(3):344-58

2014       Natashin PV, Markova SV, Lee J, Vysotski ES, Liu ZJ (2014) Crystal structures of the F88Y obelin mutant before and after bioluminescence provide molecular insight into spectral tuning among hydromedusan photoproteins. FEBS J. 281(5):1432-45.

2014       Song, G., Cheng, C., Wang, Li, Y., L., Ding, Shaw, N., Xiao, Z*, and Liu, Z. J*, (2014) Crystal structure of the N-terminal methyltransferase-like Proteins, doi: 10.1002/prot.24443.

2014       Jiao L, Ouyang S, Shaw N, Song G, Feng Y, Niu F, Qiu W, Zhu H, Hung LW, Zuo X, Shtykova E, Zhu P, Dong YH, Xu R*, Liu ZJ*. (2014) Mechanism of the Rpn13-induced activation of Uch37, Protein Cell, 10.1007/s13238-014-0046-z.

2014        Natashin PV, Ding W, Eremeeva EV, Markova SV, Lee J, Vysotski ES, Liu ZJ.. (2014) Structures of the Ca2+-regulated photoprotein obelin Y138F mutant before and afterbioluminescence support the catalytic function of a water molecule in the reaction. Acta Crystallogr D Biol Crystallogr, doi: 10.1107/S1399004713032434

2015       Kang Y, Zhou XE, Gao X, He Y, Liu W, Ishchenko A, Barty A, White TA, Yefanov O, Han GW, Xu Q, de Waal PW, Ke J, Tan MH, Zhang C, Moeller A, West GM, Pascal BD, Van Eps N, Caro LN, Vishnivetskiy SA, Lee RJ, Suino-Powell KM, Gu X, Pal K, Ma J, Zhi X, Boutet S, Williams GJ, Messerschmidt M, Gati C, Zatsepin NA, Wang D, James D, Basu S, Roy-Chowdhury S, Conrad CE, Coe J, Liu H, Lisova S, Kupitz C, Grotjohann I, Fromme R, Jiang Y, Tan M, Yang H, Li J, Wang M, Zheng Z, Li D, Howe N, Zhao Y, Standfuss J, Diederichs K, Dong Y, Potter CS, Carragher B, Caffrey M, Jiang H, Chapman HN, Spence JC, Fromme P, Weierstall U, Ernst OP, Katritch V, Gurevich VV, Griffin PR, Hubbell WL, Stevens RC, Cherezov V, Melcher K, Xu HE.Crystal structure of rhodopsin bound to arrestin by femtosecond X-ray laser.Nature. 2015 Jul 30;523(7562):561-7. doi: 10.1038/nature14656. Epub 2015 Jul 22.

2015       Chrencik JE, Roth CB, Terakado M, Kurata H, Omi R, Kihara Y, Warshaviak D, Nakade S, Asmar-Rovira G, Mileni M, Mizuno H, Griffith MT, Rodgers C, Han GW, Velasquez J, Chun J, Stevens RC, Hanson MA. Crystal Structure of Antagonist Bound Human Lysophosphatidic Acid Receptor 1.Cell. 2015 Jun 18;161(7):1633-43. doi: 10.1016/j.cell.2015.06.002.

2015       Zhang H, Unal H, Gati C, Han GW, Liu W, Zatsepin NA, James D, Wang D, Nelson G, Weierstall U, Sawaya MR, Xu Q, Messerschmidt M, Williams GJ, Boutet S, Yefanov OM, White TA, Wang C, Ishchenko A, Tirupula KC, Desnoyer R, Coe J, Conrad CE, Fromme P, Stevens RC, Katritch V, Karnik SS, Cherezov V. Structure of the Angiotensin receptor revealed by serial femtosecond crystallography. Cell. 2015 May 7;161(4):833-44. doi: 10.1016/j.cell.2015.04.011. Epub 2015 Apr 23.

2015       Zhang D, Gao ZG, Zhang K, Kiselev E, Crane S, Wang J, Paoletta S, Yi C, Ma L, Zhang W, Han GW, Liu H, Cherezov V, Katritch V, Jiang H, Stevens RC, Jacobson KA, Zhao Q, Wu B. Two disparate ligand-binding sites in the human P2Y1 receptor. Nature. 2015 Apr 16;520(7547):317-21. doi: 10.1038/nature14287. Epub 2015 Mar 30.

2015       Ni X, Ru H, Ma F, Zhao L, Shaw N, Feng Y, Ding W, Gong W, Wang Q, Ouyang S, Cheng G, Liu ZJ. New insights into the structural basis of DNA recognition by HINa and HINb domains of IFI16. J Mol Cell Biol. 2015 Aug 5. pii: mjv053. [Epub ahead of print]

2015       Yang L, Yang D, de Graaf C, Moeller A, West GM, Dharmarajan V, Wang C, Siu FY, Song G, Reedtz-Runge S, Pascal BD, Wu B, Potter CS, Zhou H, Griffin PR, Carragher B, Yang H, Wang MW, Stevens RC, Jiang H. Conformational states of the full-length glucagon receptor. Nat Commun. 2015 Jul 31;6:7859. doi: 10.1038/ncomms8859.

2015       Dong LL, Li QD, Wu D, Sun YF, Zhou M, Zhao KH. A novel periplasmic protein (Slr0280) tunes photomixotrophic growth of the cyanobacterium, Synechocystis sp. PCC 6803. Gene. 2015 Sep 11. pii: S0378-1119(15)01095-1. doi: 10.1016/j.gene.2015.09.015. [Epub ahead of print]

2015       Zhang X-J, Stevens R.C., Xu F*. (2015) “The importance of ligands for G protein-coupled receptor stability” Trends Biochem Sci, 40(1): 79-87.

2016       Hua T, Vemuri K, Pu M, Qu L, Han GW, Wu Y, Zhao S, Shui W, Li S, Korde A, Laprairie RB, Stahl EL, Ho JH, Zvonok N, Zhou H, Kufareva I, Wu B, Zhao Q, Hanson MA, Bohn LM, Makriyannis A, Stevens RC, Liu ZJ. (2016) Crystal Structure of the Human Cannabinoid Receptor CB1. Cell, doi: 10.1016/j.cell.2016.10.004

2016       Li J, Rodriguez JP, Niu F, Pu M, Wang J, Hung LW, Shao Q, Zhu Y, Ding W, Liu Y, Da Y, Yao Z, Yang J, Zhao Y, Wei GH, Cheng G, Liu ZJ, Ouyang S. (2016) Structural basis for DNA recognition by STAT6. PNAS, doi: 10.1073/pnas.1611228113.

2016       Batyuk A, Galli L, Ishchenko A, Han GW, Gati C, Popov PA, Lee MY, Stauch B, White TA, Barty A, Aquila A, Hunter MS, Liang M, Boutet S, Pu M, Liu ZJ, Nelson G, James D, Li C, Zhao Y, Spence JC, Liu W, Fromme P, Katritch V, Weierstall U, Stevens RC, Cherezov V. (2016) Native Phasing of X-ray Free Electron Laser data for a G protein-coupled receptor. Science Advances, doi: 10.1126/sciadv.1600292

2016       Lv X, Liu J, Shi Q, Tan Q, Wu D, Skinner JJ, Walker AL, Zhao L, Gu X, Chen N, Xue L, Si P, Zhang L, Wang Z, Katritch V, Liu ZJ, Stevens RC. (2016) In vitro expression and analysis of the 826 human G protein-coupled receptors. Protein Cell, doi: 10.1007/s13238-016-0263-8

2016       D Liu, K. Wüthrich (2016) Ring current shifts in (19) F-NMR of membrane proteins. J Biomol NMR, 65(1):1-5.

2016       Liu D, Cowburn D* (2016) Combining biophysical methods to analyze the disulfide bond in SH2 domain of C-terminal Src kinase. Biophys Rep 2:33-43

2016       Yuan S, Chan HC, Vogel H, Filipek S, Stevens RC, Palczewski K.The Molecular Mechanism of P2Y1 Receptor Activation. Angew Chem Int Ed Engl., 2016, 55(35):10331-5.

2016       Zhou XE, Gao X, Barty A, Kang Y, He Y, Liu W, Ishchenko A, White TA, Yefanov O, Han GW, Xu Q, de Waal PW, Suino-Powell KM, Boutet S, Williams GJ, Wang M, Li D, Caffrey M, Chapman HN, Spence JC, Fromme P, Weierstall U, Stevens RC, Cherezov V, Melcher K, Xu HE. X-ray laser diffraction for structure determination of the rhodopsin-arrestin complex. Sci Data., 2016, 3:160021.

2016       Yang LY, Liu XF, Yang Y, Yang LL, Liu KW, Tang YB, Zhang M, Tan MJ, Cheng SM, Xu YC, Yang HY, Liu ZJ, Song GJ, Huang W. Biochemical features of the adhesion G protein-coupled receptor CD97 related to its auto-proteolysis and HeLa cell attachment activities. Acta Pharmacologica Sinica, 2016, doi: 10.1038/aps.2016.89.

2016       Jiang Y, Zhu Y, Liu ZJ, Ouyang S. The emerging roles of the DDX41 protein in immunity and diseases. Protein & Cell, 2016: 1-7.

2016       Burakova LP, Natashin PV, Malikova NP, Niu F, Pu M, Vysotski ES, Liu ZJ. All Ca2+-binding loops of light-sensitive ctenophore photoprotein berovin bind magnesium ions: The spatial structure of Mg2+-loaded apo-berovin. J PhotochemPhotobiolB: Biol, 2016, 154: 57-66.

2016       Yang D, de Graaf C, Yang L, Song GJ, Dai A, Cai X, Feng Y, Reedtz-Runge S, Hanson MA, Yang H, Jiang H, Stevens RC, Wang MW. Structural Determinants of Binding the Seven-transmembrane Domain of the Glucagon-like Peptide-1 Receptor. Journal of Biological Chemistry, 2016: JBC. M116. 721977.

2016       Jiang Y, Jiang H, Zhou S, Meng B, Liu ZJ, Ouyang S. Crystal structure of hGEF-H1 PH domain provides insight into incapability in phosphoinositide binding. BBRC, 2016, 471(4): 621-627.

2016       Fu X, Wang ZH, Li LX, Dong SS, Li ZC, Jiang ZZ, Wang YF, Shui WQ*, Novel Chemical Ligands to Ebola Virus and Marburg Virus Nucleoproteins Identified by Combining Affinity Mass Spectrometry and Metabolomics Approaches. Scientific Reports 2016, 6: 29680.

2017       X. Zhang, F. Zhao, Y. Wu, J. Yang, G. Y. Han, S. Zhao, A. Ishchenko, K. Ding, L. Ye, X. Lin, V. Dharmarajan, P. Griffin, Q. Shen, M. A. Hanson, V. Cherezov, R. C.  Stevens, W. Tan,* H. Tao,* and F. Xu,* (2017) Crystal structure of a multi-domain human smoothened receptor in complex with a super stabilizing ligand. Nature Commun., 8:15383.

2017       Hua T, Vemuri K, Nikas SP, Laprairie RB, Wu Y, Qu L, Pu M, Korde A, Jiang S, Ho JH, Han GW, Ding K, Li X, Liu H, Hanson MA, Zhao S, Bohn LM, Makriyannis A, Stevens RC, Liu ZJ. (2017) Crystal structures of agonist-bound human cannabinoid receptor CB1. Nature, doi: 10.1038/nature23272.

2017       Song G, Yang D, Wang Y, de Graaf C, Zhou Q, Jiang S, Liu K, Cai X, Dai A, Lin G, Liu D, Wu F,5,6, Wu Y, Zhao S, Ye L, Han GW, Lau J, Wu B, Hanson MA, Liu ZJ, Wang MW, Stevens RC. (2017) Human GLP-1 receptor transmembrane domain structure in complex with allosteric modulators. Nature, doi: 10.1038/nature22378

2017       Y Hou, W Hu, X Li, JJ Skinner, D Liu, K. Wüthrich (2017) Solvent-accessibility of discrete residue positions in the polypeptide hormone glucagon by 19F-NMR observation of 4-fluorophenylalanine. J Biomol NMR, 68: 1-6.

2017       Pu M, Xu Z, Peng Y, Hou Y, Liu D, Wang Y, Liu H*, Song G*, Liu ZJ* (2017) Protein crystal quality oriented disulfide bond engineering, Protein Cell (Accepted).

2017       Liu D, Cowburn D* (2017) Segmental Isotopic Labeling of Proteins for NMR Study Using Intein Technology. Methods Mol Biol 1495:131-145

2017       Liu D, Yuan Y, Xu R, Cowburn D* (2017) Domain interactions of C-terminal Src Kinase determined through NMR spectroscopy with segmental isotope labeling. Protein Cell 8:67-71

2017       Ma Y, Yue Y, Ma Y, Zhang Q, Zhou Q, Song Y, Shen Y, Li X, Ma X, Li C, Hanson M.A., Han G.W., Sickmier E.A., Swaminath G, Zhao S. Stevens R.C., Hu L.A., Zhong W, Zhang M, and Xu F*. (2017) “Structural Basis for Apelin Control of the Human Apelin Receptor” Structure, 25: 858-866.

2017       Wang XB, Li SS, Wang HC, Shui WQ*, Hu JJ*, Quantitative proteomics reveal proteins enriched in the tubular endoplasmic reticulum of Saccharomyced cerevisiae. eLife 2017, 6: e23816.

2017       Li SS, Cao QC, Xiao WD, Guo YF, Yang YF, Duan XX, Shui WQ*, Optimization of Acquisition and Data-Processing Parameters for Improved Proteomic Quantification by Sequential Window Acquisition of All Theoretical Fragment Ion Mass Spectrometry. Journal of Proteome Research 2017, 16(2): 738~747.

2017       Li ZC, Li YJ, Chen WJ, Cao QC, Guo YF, Wan N, Jiang XL, Tang YJ, Wang QH, Shui WQ*, Integrating MS1 and MS2 Scans in High-Resolution Parallel Reaction Monitoring Assays for Targeted Metabolite Quantification and Dynamic 13C-Labeling Metabolism Analysis. Analytical Chemistry 2017, 89(1): 877~885.

2017       X.E. Zhou, Y. He, P.W. de Waal, X. Gao, Y. Kang, N. Van Eps, Y. Yin, K. Pal, D. Goswami, T.A. White, A. Barty, N.R. Latorraca, H.N. Chapman, W.L. Hubbell, R.O. Dror, R.C. Stevens, V. Cherezov, V.V. Gurevich, P.R. Griffin, O.P. Ernst, K. Melcher, H.E. Xu “Identification of Phosphorylation Codes for Arrestin Recruitment by G Protein-Coupled Receptors” Cell. 2017 Jul 27;170(3):457-469.e13. doi: 10.1016/j.cell.2017.07.002.

2017       D. Wacker, R.C. Stevens, B.L. Roth “How Ligands Illuminate GPCR Molecular Pharmacology” Cell. 2017 Jul 27;170(3):414-427. doi: 10.1016/j.cell.2017.07.009. Review.

2017       Ishchenko, D. Wacker, M. Kapoor, A. Zhang, G.W. Han, S. Basu, N. Patel, M. Messerschmidt, U. Weierstall, W. Liu, V. Katritch, B.L. Roth, R.C. Stevens, V. Cherezov “Structural insights into the extracellular recognition of the human serotonin 2B receptor by an antibody” Proc Natl Acad Sci U S A. 2017 Aug 1;114(31):8223-8228. doi: 10.1073/pnas.1700891114. Epub 2017 Jul 17.

2017       F. Wu, G. Song, C. de Graaf, R.C. Stevens “Structure and function of peptide-binding G protein-coupled receptors” J Mol Biol 2017 Aug 18;429(17):2726-2745. doi: 10.1016/j.jmb.2017.06.022. Epub 2017 Jul 11. Review. 348.

2017       Y. Zheng, G.W. Han, R. Abagyan, B. Wu, R.C. Stevens, V. Cherezov, I. Kufareva, T.M. Handel “Structure of CC chemokine receptor 5 with a potent chemokine antagonist reveals mechanisms of chemokine recognition and molecular mimicry by HIV” Immunity 46, 1005-1017.e5 (2017).

2017       H. Zhang, A. Qiao. D. Yang, L. Yang, A. Dai, C. de Graaf, S. Reedtz-Runge, V. Dharmarajan, H. Zhang, G.W. Han, T.D. Grant, R.G. Sierra, U. Weierstall, G. Nelson, W. Liu, Y. Wu, L. Ma, X. Cai, G. Lin, X. Wu, Z. Geng, Y. Dong, G. Song, P.R. Griffin, J. Lau, V. Cherezov, H. Yang, M.A. Hanson, R.C. Stevens, Q. Zhao, H. Jiang, M-W. Wang, B. Wu “Structure of the full-length glucagon class B G protein-coupled receptor” Nature 546, 259-264 (2017).


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